Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1323KEGG: cph:Cpha266_1270 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Ppha_1322
Hypothetical protein; KEGG: cch:Cag_0916 C-type cytochrome, putative.
 
     0.628
Ppha_0671
KEGG: cph:Cpha266_0557 hypothetical protein.
  
     0.622
Ppha_1990
KEGG: cte:CT1757 hypothetical protein.
  
     0.520
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.507
Ppha_1338
PFAM: cytoplasmic chaperone TorD family protein; KEGG: cte:CT0493 hypothetical protein.
  
     0.496
Ppha_1321
KEGG: plt:Plut_0346 hypothetical protein.
       0.468
Ppha_1146
KEGG: cph:Cpha266_1423 hypothetical protein.
  
     0.441
Ppha_1105
PFAM: Curli production assembly/transport component CsgG; KEGG: cph:Cpha266_1717 curli production assembly/transport component CsgG.
  
     0.406
Ppha_0247
Conserved hypothetical protein; KEGG: gvi:gll1120 unknown protein.
  
     0.404
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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