STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1344PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_1238 methyltransferase type 11. (218 aa)    
Predicted Functional Partners:
Ppha_1342
KEGG: cte:CT1087 sulfide-quinone reductase.
       0.615
Ppha_1343
PFAM: protein of unknown function DUF134; KEGG: cch:Cag_0886 hypothetical protein; Belongs to the UPF0251 family.
       0.615
Ppha_1345
KEGG: cph:Cpha266_2565 hypothetical protein.
  
    0.568
Ppha_1341
PFAM: OsmC family protein; KEGG: cph:Cpha266_1001 OsmC family protein.
  
    0.423
Ppha_1346
KEGG: cte:CT0982 hypothetical protein.
       0.406
Ppha_1347
KEGG: cch:Cag_0882 sulfide-quinone reductase, putative.
 
   
 0.400
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.