Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1345KEGG: cph:Cpha266_2565 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.586
Ppha_1517
KEGG: cph:Cpha266_1093 hypothetical protein.
  
     0.577
Ppha_0671
KEGG: cph:Cpha266_0557 hypothetical protein.
  
     0.570
Ppha_1344
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_1238 methyltransferase type 11.
  
    0.568
Ppha_2398
KEGG: cph:Cpha266_2043 hypothetical protein.
  
     0.565
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
     0.549
Ppha_1346
KEGG: cte:CT0982 hypothetical protein.
       0.536
Ppha_2781
KEGG: cph:Cpha266_2535 phospholipase/carboxylesterase.
  
     0.495
Ppha_0465
PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase.
  
     0.478
Ppha_2204
PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0688 hypothetical protein.
  
     0.476
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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