STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1352PFAM: basic membrane lipoprotein; KEGG: cph:Cpha266_1340 basic membrane lipoprotein. (347 aa)    
Predicted Functional Partners:
Ppha_1529
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1498 ATPase.
 
 
 0.988
Ppha_0630
PFAM: inner-membrane translocator; KEGG: pvi:Cvib_1448 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.977
Ppha_1530
PFAM: inner-membrane translocator; KEGG: cch:Cag_1499 membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.973
Ppha_1353
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_0793 3-beta hydroxysteroid dehydrogenase/isomerase family protein.
       0.548
Ppha_1351
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_0383 oxidoreductase, short-chain dehydrogenase/reductase family.
       0.465
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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