Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1360Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: cph:Cpha266_1331 CBS domain containing protein. (229 aa)    
Predicted Functional Partners:
Ppha_1359
KEGG: cch:Cag_0901 ribose/galactose isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase.
     
 0.798
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
     0.744
Ppha_1357
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cch:Cag_0899 5-formyltetrahydrofolate cyclo-ligase, putative; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.727
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
       0.726
Ppha_0689
KEGG: cph:Cpha266_0565 hypothetical protein.
 
     0.719
Ppha_1503
KEGG: cph:Cpha266_1535 hypothetical protein.
  
     0.707
Ppha_2548
KEGG: pvi:Cvib_0351 hypothetical protein.
  
     0.694
Ppha_1650
PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein.
 
     0.685
Ppha_1876
PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; Belongs to the ferrochelatase family.
  
    0.660
Ppha_0652
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15).
  
    0.649
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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