STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1373PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1552 uncharacterised conserved protein UCP025560. (115 aa)    
Predicted Functional Partners:
Ppha_1374
KEGG: cph:Cpha266_1551 hypothetical protein.
 
  
 0.953
Ppha_1372
KEGG: pvi:Cvib_0831 hypothetical protein.
 
   
 0.938
Ppha_1375
PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1326 pentapeptide repeat protein.
       0.439
Ppha_1370
TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: cph:Cpha266_2176 death-on-curing family protein.
       0.419
Ppha_1371
Transcriptional regulator/antitoxin, MazE; TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_2175 transcriptional regulator/antitoxin, MazE.
       0.419
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.