STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1375PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1326 pentapeptide repeat protein. (514 aa)    
Predicted Functional Partners:
Ppha_2008
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 TPR repeat.
  
    0.613
Ppha_1712
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 TPR repeat.
  
    0.598
Ppha_2917
SEFIR domain protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SEFIR domain protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_3004 TPR repeat protein.
 
  
 0.518
Ppha_1420
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1708 hypothetical protein.
  
     0.482
Ppha_1374
KEGG: cph:Cpha266_1551 hypothetical protein.
       0.460
Ppha_1471
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A3708 hypothetical protein.
  
     0.451
Ppha_0373
PFAM: WD-40 repeat protein; KEGG: cch:Cag_0213 WD-40 repeat.
  
     0.442
Ppha_1373
PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1552 uncharacterised conserved protein UCP025560.
       0.439
Ppha_1376
PFAM: plasmid maintenance system killer; KEGG: chu:CHU_0643 hypothetical protein.
       0.437
Ppha_1377
Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: chu:CHU_0642 hypothetical protein.
       0.437
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.