STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1389PFAM: GCN5-related N-acetyltransferase; Rubredoxin-type Fe(Cys)4 protein; KEGG: cph:Cpha266_1314 GCN5-related N-acetyltransferase; Belongs to the rubredoxin family. (212 aa)    
Predicted Functional Partners:
Ppha_1862
KEGG: cph:Cpha266_0972 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein.
  
 
 0.635
Ppha_1718
PFAM: Protein of unknown function DUF1778; KEGG: rpe:RPE_1144 hypothetical protein.
   
   0.499
Ppha_1843
PFAM: Protein of unknown function DUF1778; KEGG: plu:plu3889 hypothetical protein.
   
   0.499
Ppha_0091
PFAM: peptidase M22 glycoprotease; KEGG: cch:Cag_1986 protease, putative.
  
 
 0.485
Ppha_1985
KEGG: plt:Plut_1351 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.478
Ppha_0695
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0571 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.467
Ppha_1390
PFAM: protein of unknown function UPF0016; KEGG: cph:Cpha266_1312 protein of unknown function UPF0016.
       0.465
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.454
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.430
Ppha_0394
PFAM: glutaredoxin; glutaredoxin 2; KEGG: cte:CT0237 hypothetical protein.
  
  
 0.416
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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