Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1399KEGG: cph:Cpha266_2183 hypothetical protein. (211 aa)    
Predicted Functional Partners:
Ppha_2825
KEGG: mar:MAE_46960 hypothetical protein.
  
     0.611
Ppha_0967
KEGG: pvi:Cvib_0081 hypothetical protein.
  
     0.607
Ppha_0161
PFAM: protein of unknown function UPF0175; KEGG: cph:Cpha266_0647 hypothetical protein.
  
     0.532
Ppha_1722
KEGG: ape:APE_0890a.1 hypothetical protein.
  
     0.497
Ppha_2007
KEGG: cch:Cag_0872 hypothetical protein.
  
     0.459
Ppha_1094
PFAM: major facilitator superfamily MFS_1; KEGG: cch:Cag_0889 transporter, putative.
  
     0.439
Ppha_1398
KEGG: cph:Cpha266_1287 hypothetical protein.
       0.425
Ppha_0061
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: gsu:GSU0056 hypothetical protein.
  
     0.406
Ppha_0192
KEGG: gur:Gura_3956 hypothetical protein.
  
     0.405
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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