STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1403KEGG: cph:Cpha266_1285 hypothetical protein. (99 aa)    
Predicted Functional Partners:
Ppha_1402
KEGG: cph:Cpha266_1284 hypothetical protein.
 
     0.895
Ppha_0902
KEGG: rfe:RF_0889 hypothetical protein.
  
     0.710
Ppha_0905
KEGG: rpe:RPE_0295 hypothetical protein.
  
     0.670
Ppha_2428
KEGG: rfe:RF_0889 hypothetical protein.
  
     0.662
Ppha_1098
KEGG: mar:MAE_20890 hypothetical protein.
  
     0.654
Ppha_0193
KEGG: gur:Gura_3957 hypothetical protein.
  
     0.618
Ppha_2375
KEGG: amt:Amet_0300 hypothetical protein.
  
     0.607
Ppha_2659
KEGG: cph:Cpha266_0264 hypothetical protein.
  
     0.552
Ppha_1404
KEGG: cph:Cpha266_1289 hypothetical protein.
       0.477
Ppha_1401
KEGG: pdi:BDI_2151 hypothetical protein.
       0.459
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.