Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1404KEGG: cph:Cpha266_1289 hypothetical protein. (130 aa)    
Predicted Functional Partners:
Ppha_0895
KEGG: cch:Cag_0843 hypothetical protein.
  
     0.553
Ppha_0891
KEGG: cph:Cpha266_1443 hypothetical protein.
  
     0.511
Ppha_0892
KEGG: cch:Cag_0843 hypothetical protein.
  
     0.478
Ppha_1403
KEGG: cph:Cpha266_1285 hypothetical protein.
       0.477
Ppha_1402
KEGG: cph:Cpha266_1284 hypothetical protein.
       0.445
Ppha_0901
KEGG: cch:Cag_0838 hypothetical protein.
  
     0.442
Ppha_0900
KEGG: cch:Cag_0839 hypothetical protein.
  
     0.434
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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