STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1428Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: lpn:lpg2559 ATP-dependent DNA helicase. (620 aa)    
Predicted Functional Partners:
Ppha_2241
KEGG: mem:Memar_0416 putative transcriptional regulator.
  
  
  0.940
Ppha_0889
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: gur:Gura_2922 putative transcriptional regulator.
  
  
 
0.929
Ppha_1124
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: cch:Cag_1221 putative transcriptional regulator.
  
  
 
0.929
Ppha_1448
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0507 divergent AAA ATPase.
  
  
 
0.929
Ppha_2209
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: cch:Cag_0166 putative transcriptional regulator.
  
  
 
0.929
Ppha_1455
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1129 putative transcriptional regulator.
  
  
 
0.928
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
  0.900
Ppha_2123
KEGG: gur:Gura_4113 putative transcriptional regulator.
  
     0.681
Ppha_0363
KEGG: mbu:Mbur_0507 divergent AAA ATPase.
  
     0.625
Ppha_0904
ATPase; KEGG: cph:Cpha266_2115 ATPase.
  
     0.605
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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