Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ppha_1441PFAM: protein of unknown function UPF0150; KEGG: mar:MAE_44020 hypothetical protein. (69 aa)    
Predicted Functional Partners:
Ppha_2116
KEGG: mar:MAE_62820 hypothetical protein.
 
 
 
 0.534
Ppha_2131
Transcriptional modulator of MazE/toxin, MazF; KEGG: mar:MAE_02430 hypothetical protein.
  
   
 0.489
Ppha_1594
KEGG: mar:MAE_00130 hypothetical protein.
   
 
 0.471
Ppha_1440
KEGG: rba:RB11160 hypothetical protein.
       0.460
Ppha_0634
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cph:Cpha266_1844 hypothetical protein.
  
     0.412
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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