Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1456PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1128 type III restriction enzyme, res subunit. (932 aa)    
Predicted Functional Partners:
Ppha_1454
PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: cph:Cpha266_1130 N-6 DNA methylase.
 
 
 0.967
Ppha_1452
PFAM: restriction modification system DNA specificity domain; KEGG: cch:Cag_1526 restriction endonuclease S subunits-like.
 
 
 0.962
Ppha_1450
Hypothetical protein; KEGG: tcx:Tcr_0366 TIR.
 
     0.812
Ppha_1455
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1129 putative transcriptional regulator.
  
    0.777
Ppha_1451
Hypothetical protein.
       0.773
Ppha_1453
Hypothetical protein.
       0.773
Ppha_1449
KEGG: cph:Cpha266_1142 hypothetical protein.
       0.527
Ppha_2038
KEGG: swo:Swol_0997 hypothetical protein.
 
 
 0.523
Ppha_1218
PFAM: N-6 DNA methylase; KEGG: spc:Sputcn32_3524 N-6 DNA methylase.
 
 
 0.516
Ppha_1458
PFAM: PEBP family protein; KEGG: rfr:Rfer_3962 YbcL.
 
     0.492
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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