Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ppha_1459PFAM: SMC domain protein; KEGG: cch:Cag_1092 hypothetical protein. (1171 aa)    
Predicted Functional Partners:
Ppha_1460
PFAM: metallophosphoesterase; KEGG: cch:Cag_1093 putative exonuclease.
 
   0.952
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
       0.568
Ppha_0120
Hypothetical protein.
  
     0.481
Ppha_1413
Hypothetical protein.
  
     0.481
Ppha_1922
Hypothetical protein.
  
     0.481
Ppha_2297
Hypothetical protein.
  
     0.481
Ppha_2347
Hypothetical protein.
  
     0.481
Ppha_2646
Hypothetical protein.
  
     0.481
Ppha_1458
PFAM: PEBP family protein; KEGG: rfr:Rfer_3962 YbcL.
       0.480
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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