STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1477KEGG: cch:Cag_0916 C-type cytochrome, putative. (139 aa)    
Predicted Functional Partners:
Ppha_1322
Hypothetical protein; KEGG: cch:Cag_0916 C-type cytochrome, putative.
  
  
 
0.902
Ppha_2075
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: cch:Cag_1357 cytochrome-c oxidase FixO chain.
  
 
 0.717
Ppha_2074
PFAM: cytochrome c oxidase subunit I; KEGG: cch:Cag_1356 cytochrome-cbb3 oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.688
Ppha_1347
KEGG: cch:Cag_0882 sulfide-quinone reductase, putative.
 
  
 0.679
Ppha_2724
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0183 outer membrane efflux protein.
  
    0.573
Ppha_1690
KEGG: cph:Cpha266_1199 hypothetical protein.
  
     0.548
Ppha_1726
KEGG: cph:Cpha266_1199 hypothetical protein.
  
     0.531
Ppha_0257
KEGG: cch:Cag_1865 hypothetical protein.
  
     0.520
Ppha_1335
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cte:CT0496 polysulfide reductase, subunit A, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 
 0.517
Ppha_1476
PFAM: regulatory protein ArsR; KEGG: cch:Cag_0425 putative transcriptional regulator, ArsR family.
 
   
 0.515
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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