STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1482PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cch:Cag_1114 DegT/DnrJ/EryC1/StrS family protein; Belongs to the DegT/DnrJ/EryC1 family. (385 aa)    
Predicted Functional Partners:
Ppha_1214
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cch:Cag_0723 oxidoreductase, Gfo/Idh/MocA family.
 
  
 0.775
Ppha_1484
PFAM: acylneuraminate cytidylyltransferase; KEGG: cph:Cpha266_1514 acylneuraminate cytidylyltransferase.
  
  
 0.743
Ppha_1483
PFAM: iron-containing alcohol dehydrogenase; KEGG: cch:Cag_1128 alcohol dehydrogenase, iron-containing.
       0.710
Ppha_0520
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_2635 polysaccharide biosynthesis protein CapD.
 
  
 0.667
Ppha_1485
KEGG: cph:Cpha266_1515 hypothetical protein.
  
  
 0.657
Ppha_0533
PFAM: oxidoreductase domain protein; KEGG: pmf:P9303_01161 hypothetical protein.
 
  
 0.655
Ppha_1486
KEGG: cph:Cpha266_1516 hypothetical protein.
       0.640
Ppha_2291
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0516 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.580
Ppha_0762
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cph:Cpha266_0615 oxidoreductase domain protein.
 
  
 0.548
Ppha_0558
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: gur:Gura_1672 polysaccharide biosynthesis protein CapD.
  
  
 0.482
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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