Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ppha_1495KEGG: cph:Cpha266_1527 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Ppha_1496
PFAM: cyclase/dehydrase; KEGG: cph:Cpha266_1528 cyclase/dehydrase.
 
    
0.701
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.689
Ppha_1372
KEGG: pvi:Cvib_0831 hypothetical protein.
  
     0.677
Ppha_1200
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cch:Cag_1395 anti-anti-sigma factor, putative.
  
     0.660
Ppha_1664
KEGG: cph:Cpha266_1274 hypothetical protein.
  
     0.639
Ppha_2149
PFAM: ferredoxin; KEGG: pvi:Cvib_1151 ferredoxin.
  
     0.639
Ppha_1674
KEGG: cph:Cpha266_1046 hypothetical protein.
  
     0.607
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
     0.600
Ppha_1775
KEGG: cch:Cag_0405 hypothetical protein.
  
     0.576
Ppha_2481
KEGG: cph:Cpha266_2147 hypothetical protein.
  
     0.568
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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