Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1496PFAM: cyclase/dehydrase; KEGG: cph:Cpha266_1528 cyclase/dehydrase. (218 aa)    
Predicted Functional Partners:
Ppha_1495
KEGG: cph:Cpha266_1527 hypothetical protein.
 
    
0.701
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.695
Ppha_1372
KEGG: pvi:Cvib_0831 hypothetical protein.
  
     0.685
Ppha_1674
KEGG: cph:Cpha266_1046 hypothetical protein.
  
     0.641
Ppha_2149
PFAM: ferredoxin; KEGG: pvi:Cvib_1151 ferredoxin.
  
     0.635
Ppha_1497
Carboxyl-terminal protease; KEGG: cch:Cag_0813 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.
       0.633
Ppha_1664
KEGG: cph:Cpha266_1274 hypothetical protein.
  
     0.628
Ppha_1274
SMART: nuclear protein SET; KEGG: plt:Plut_1126 nuclear protein SET.
  
     0.626
Ppha_1200
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cch:Cag_1395 anti-anti-sigma factor, putative.
  
     0.618
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
  
     0.596
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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