STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1503KEGG: cph:Cpha266_1535 hypothetical protein. (283 aa)    
Predicted Functional Partners:
Ppha_1504
KEGG: cph:Cpha266_1536 hypothetical protein.
 
     0.915
Ppha_1517
KEGG: cph:Cpha266_1093 hypothetical protein.
  
     0.772
Ppha_2775
KEGG: cph:Cpha266_1807 hypothetical protein.
  
     0.770
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
 
     0.768
Ppha_1650
PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein.
 
     0.747
Ppha_1876
PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; Belongs to the ferrochelatase family.
  
     0.726
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.713
Ppha_0652
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15).
  
     0.710
Ppha_1360
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: cph:Cpha266_1331 CBS domain containing protein.
  
     0.707
Ppha_0909
KEGG: pvi:Cvib_1196 hypothetical protein.
  
     0.706
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.