STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1528PFAM: Alcohol dehydrogenase GroES domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: plt:Plut_0923 chlorobiumquinone synthase BchC related protein. (320 aa)    
Predicted Functional Partners:
Ppha_2411
TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: cph:Cpha266_2075 chlorophyllide reductase subunit Y.
 
  
 0.801
Ppha_0177
TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: cch:Cag_1716 chlorophyllide reductase subunit Z.
 
  
 0.796
Ppha_2338
PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: plt:Plut_0408 2-vinyl bacteriochlorophyllide hydratase.
  
  
 0.780
Ppha_2749
TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cph:Cpha266_0198 2-vinyl bacteriochlorophyllide hydratase.
  
  
 0.776
Ppha_0981
PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cch:Cag_0402 2-vinyl bacteriochlorophyllide hydratase.
  
  
 0.772
Ppha_1529
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1498 ATPase.
     
 0.754
Ppha_0990
PFAM: PUCC protein; KEGG: cte:CT1441 PucC protein.
  
     0.736
Ppha_0328
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase.
  
  
 0.714
Ppha_0708
TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_0583 bacteriochlorophyll/chlorophyll a synthase.
 
  
 0.706
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
  
  
 0.694
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.