STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1529PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1498 ATPase. (513 aa)    
Predicted Functional Partners:
Ppha_1530
PFAM: inner-membrane translocator; KEGG: cch:Cag_1499 membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
Ppha_0630
PFAM: inner-membrane translocator; KEGG: pvi:Cvib_1448 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
Ppha_1352
PFAM: basic membrane lipoprotein; KEGG: cph:Cpha266_1340 basic membrane lipoprotein.
 
 
 0.985
Ppha_1528
PFAM: Alcohol dehydrogenase GroES domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: plt:Plut_0923 chlorobiumquinone synthase BchC related protein.
       0.727
Ppha_1531
KEGG: cph:Cpha266_0991 hypothetical protein.
       0.509
Ppha_1527
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.421
Ppha_1526
PFAM: Na+/solute symporter; KEGG: cch:Cag_1384 sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.417
Ppha_1525
PFAM: PfkB domain protein; KEGG: pvi:Cvib_0779 PfkB domain protein.
     
 0.416
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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