STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1533PFAM: PASTA domain containing protein; KEGG: cph:Cpha266_0989 PASTA domain containing protein. (244 aa)    
Predicted Functional Partners:
Ppha_1069
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: bth:BT_2774 putative adenylate cyclase.
  
 
 0.638
Ppha_2332
KEGG: cph:Cpha266_1999 hypothetical protein.
  
     0.633
Ppha_1534
PFAM: Polyprenyl synthetase; KEGG: cch:Cag_0963 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
    0.612
Ppha_1070
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: bth:BT_2773 hypothetical protein.
   
 
 0.606
Ppha_0333
KEGG: cch:Cag_0197 hypothetical protein.
  
     0.560
Ppha_0642
Hypothetical protein; KEGG: cph:Cpha266_1326 pentapeptide repeat protein.
  
 
 0.556
Ppha_1056
KEGG: plt:Plut_0829 Legionella vir region protein.
  
 
 0.556
Ppha_1071
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: bth:BT_2772 putative protein phosphatase.
  
 
 0.556
murF
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
  
 0.536
Ppha_0329
KEGG: cch:Cag_1809 hypothetical protein.
  
     0.461
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.