Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1558Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bpt:Bpet1353 putative DNA-binding protein. (114 aa)    
Predicted Functional Partners:
Ppha_1557
PFAM: HipA domain protein; KEGG: bxe:Bxe_B2229 hypothetical protein.
 
    0.947
Ppha_0261
PFAM: HipA domain protein; KEGG: eca:ECA0127 hypothetical protein.
  
    0.778
Ppha_0266
PFAM: HipA domain protein; KEGG: hch:HCH_01139 uncharacterized protein related to capsule biosynthesis enzyme.
  
    0.778
Ppha_0283
KEGG: gur:Gura_3064 hypothetical protein.
  
     0.774
Ppha_1556
KEGG: cph:Cpha266_0460 protein of unknown function DUF323.
       0.773
Ppha_2229
PFAM: HipA domain protein; KEGG: aba:Acid345_2426 HipA-like protein.
  
    0.722
Ppha_1554
PFAM: PilT protein domain protein; KEGG: neu:NE2174 hypothetical protein.
       0.572
Ppha_1555
KEGG: cch:Cag_0858 hypothetical protein.
       0.572
Ppha_2046
PFAM: HipA domain protein; KEGG: cch:Cag_1275 hypothetical protein.
  
    0.516
Ppha_1553
Putative signal transduction protein with Nacht domain; PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 putative signal transduction protein with NACHT domain.
       0.418
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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