STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1603KEGG: cch:Cag_1049 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Ppha_1604
KEGG: mma:MM_2294 type I restriction-modification system specificity subunit.
 
     0.775
Ppha_2634
KEGG: cch:Cag_1995 hypothetical protein.
  
     0.760
Ppha_2633
KEGG: cch:Cag_1994 hypothetical protein.
  
     0.723
Ppha_1602
KEGG: tdn:Tmden_0480 hypothetical protein.
       0.522
Ppha_0280
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: mhu:Mhun_0713 hypothetical protein.
  
     0.491
Ppha_0275
KEGG: rba:RB453 hypothetical protein.
  
     0.468
Ppha_2635
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: cph:Cpha266_0253 putative addiction module component, TIGR02574 family.
  
     0.448
Ppha_0327
KEGG: sfu:Sfum_2080 hypothetical protein.
  
     0.435
Ppha_1739
KEGG: mlo:mlr2530 hypothetical protein.
  
     0.432
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.