STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1617PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1644 radical SAM domain protein. (469 aa)    
Predicted Functional Partners:
Ppha_2338
PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: plt:Plut_0408 2-vinyl bacteriochlorophyllide hydratase.
  
 
 0.939
Ppha_2749
TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cph:Cpha266_0198 2-vinyl bacteriochlorophyllide hydratase.
  
 
 0.939
Ppha_2757
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0116 elongator protein 3/MiaB/NifB.
  
  
 
0.924
Ppha_2731
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_0200 radical SAM domain protein.
  
  
 
0.923
Ppha_1315
KEGG: cch:Cag_1069 hypothetical protein.
     
  0.900
Ppha_0270
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tle:Tlet_1717 radical SAM domain protein.
  
     0.747
Ppha_0328
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase.
 
  
 0.652
Ppha_1616
PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0930 phenylacetic acid degradation-related protein.
       0.526
Ppha_0759
KEGG: cph:Cpha266_0062 NADPH-dependent FMN reductase.
  
     0.453
bchB
Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
  
  
 0.427
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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