STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1635PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1335 ATPase. (229 aa)    
Predicted Functional Partners:
Ppha_1636
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1668 protein of unknown function DUF214.
 
 0.995
Ppha_1637
PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0716 protein of unknown function DUF214.
 
 0.989
Ppha_1634
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0987 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.949
Ppha_1633
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein.
   
 
 0.821
Ppha_0769
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0621 efflux transporter, RND family, MFP subunit.
 
 
 0.704
Ppha_0421
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0386 protein of unknown function DUF214.
 
 
 0.687
Ppha_0669
KEGG: plt:Plut_1632 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
     
0.672
Ppha_0487
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0480 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.617
Ppha_0718
PFAM: protein of unknown function DUF214; KEGG: cch:Cag_1781 lipoprotein releasing system.
 
 
 0.588
ddl
D-alanine/D-alanine ligase; Cell wall formation.
     
 0.532
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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