Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1638PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: plt:Plut_1338 OmpA family protein. (229 aa)    
Predicted Functional Partners:
pal-3
TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein; Belongs to the Pal lipoprotein family.
  
     0.531
Ppha_1635
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1335 ATPase.
   
 
 0.525
Ppha_0410
PFAM: outer membrane chaperone Skp (OmpH); KEGG: cch:Cag_1448 outer membrane protein OmpH.
 
 
 0.496
Ppha_1639
KEGG: cph:Cpha266_1672 hypothetical protein.
       0.492
Ppha_1633
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein.
  
 
 0.483
Ppha_2161
PFAM: WD40 domain protein beta Propeller; KEGG: pvi:Cvib_1164 WD40 domain protein beta propeller.
 
 
 0.472
Ppha_1637
PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0716 protein of unknown function DUF214.
     
 0.465
Ppha_1636
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1668 protein of unknown function DUF214.
     
 0.462
Ppha_1634
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0987 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.460
Ppha_2211
KEGG: cph:Cpha266_0681 hypothetical protein.
  
     0.406
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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