STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1672PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1049 glycosyl transferase, family 2. (289 aa)    
Predicted Functional Partners:
Ppha_1674
KEGG: cph:Cpha266_1046 hypothetical protein.
 
     0.773
Ppha_1673
KEGG: cph:Cpha266_1047 hypothetical protein.
       0.717
Ppha_0567
PFAM: glycosyl transferase family 2; KEGG: rma:Rmag_0889 glycosyl transferase, family 2.
  
     0.683
Ppha_1671
KEGG: cch:Cag_0968 hypothetical protein.
  
    0.594
Ppha_1675
PFAM: acriflavin resistance protein; KEGG: cch:Cag_0971 NolG efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
   0.575
Ppha_1676
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cch:Cag_0972 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.572
Ppha_1669
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_1050 short-chain dehydrogenase/reductase SDR.
   
   0.549
Ppha_1677
PFAM: PhoU family protein; KEGG: cph:Cpha266_1043 phosphate uptake regulator, PhoU.
 
    0.549
Ppha_1670
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: gfo:GFO_3028 DNA polymerase III subunit alpha-1.
       0.545
Ppha_1013
PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1825 glycosyl transferase, family 2.
 
  
 0.483
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.