STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1734TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: swo:Swol_0220 nucleotidyltransferase substrate-binding protein, putative. (140 aa)    
Predicted Functional Partners:
Ppha_1735
PFAM: DNA polymerase beta domain protein region; KEGG: swo:Swol_0221 hypothetical protein.
 
     0.946
Ppha_1396
PFAM: protein of unknown function DUF86; KEGG: ppd:Ppro_2947 protein of unknown function DUF86.
 
 
 
 0.813
Ppha_1588
PFAM: protein of unknown function DUF86; KEGG: cph:Cpha266_0768 protein of unknown function DUF86.
 
 
 
 0.786
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cch:Cag_1176 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.776
Ppha_1397
PFAM: DNA polymerase beta domain protein region; KEGG: bcz:pE33L466_0269 possible nucleotidyltransferase.
 
     0.537
Ppha_1736
Hypothetical protein.
       0.519
Ppha_1737
Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.
       0.519
Ppha_1732
PFAM: Squalene/phytoene synthase; KEGG: cph:Cpha266_1738 squalene/phytoene synthase.
       0.495
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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