Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1740KEGG: amr:AM1_1925 hypothetical protein. (87 aa)    
Predicted Functional Partners:
Ppha_1739
KEGG: mlo:mlr2530 hypothetical protein.
 
     0.929
Ppha_1742
KEGG: cyb:CYB_0386 hypothetical protein.
 
     0.656
Ppha_1714
KEGG: gur:Gura_2218 hypothetical protein.
  
     0.653
Ppha_1743
PFAM: protein of unknown function DUF1130; KEGG: cyb:CYB_0385 hypothetical protein.
 
     0.616
Ppha_0358
KEGG: mar:MAE_48580 hypothetical protein.
  
     0.566
Ppha_0886
KEGG: cph:Cpha266_1440 hypothetical protein.
  
     0.484
Ppha_2272
PFAM: protein of unknown function DUF497; KEGG: syn:ssr0757 hypothetical protein.
  
     0.462
Ppha_0162
KEGG: cph:Cpha266_0648 hypothetical protein.
  
     0.461
Ppha_2119
KEGG: cch:Cag_1343 hypothetical protein.
  
     0.454
Ppha_1715
PFAM: protein of unknown function DUF497; KEGG: rrs:RoseRS_0832 protein of unknown function DUF497.
  
     0.449
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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