STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1758KEGG: gsu:GSU0055 hypothetical protein. (98 aa)    
Predicted Functional Partners:
Ppha_1759
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: cte:CT1476 hypothetical protein.
 
     0.907
Ppha_0061
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: gsu:GSU0056 hypothetical protein.
 
     0.749
Ppha_0348
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: cch:Cag_0032 hypothetical protein.
 
     0.736
Ppha_2635
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: cph:Cpha266_0253 putative addiction module component, TIGR02574 family.
 
     0.735
Ppha_1706
KEGG: swo:Swol_1551 hypothetical protein.
 
     0.685
Ppha_2372
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: gsu:GSU0056 hypothetical protein.
 
     0.674
Ppha_0280
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: mhu:Mhun_0713 hypothetical protein.
 
     0.552
Ppha_0145
KEGG: cph:Cpha266_1216 hypothetical protein.
  
 
 0.469
Ppha_1179
KEGG: ppd:Ppro_1116 transcriptional regulator, CopG family.
  
 
 0.469
Ppha_1760
KEGG: cph:Cpha266_0845 alkylhydroperoxidase like protein, AhpD family.
       0.452
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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