STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1769Carotene 7,8-desaturase; PFAM: amine oxidase; KEGG: cph:Cpha266_0830 zeta-carotene desaturase. (453 aa)    
Predicted Functional Partners:
Ppha_0482
KEGG: cph:Cpha266_0474 hypothetical protein.
 
  
 0.976
Ppha_2743
KEGG: cph:Cpha266_0192 hypothetical protein.
 
  
 0.976
Ppha_2151
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cch:Cag_1888 carotenoid isomerase, putative.
 
  
 0.974
Ppha_0465
PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase.
  
  
 0.919
Ppha_1176
Carotene 7,8-desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1173 zeta-carotene desaturase.
  
  
 
0.912
Ppha_1771
PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0827 glycosyl transferase, family 2.
     
 0.783
Ppha_1770
KEGG: cch:Cag_1592 hypothetical protein.
       0.768
Ppha_1504
KEGG: cph:Cpha266_1536 hypothetical protein.
  
     0.753
Ppha_1314
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: cph:Cpha266_1275 NAD-dependent epimerase/dehydratase.
  
     0.719
Ppha_0369
PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_2359 phosphatidate cytidylyltransferase.
  
     0.702
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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