STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1774PFAM: LmbE family protein; KEGG: cch:Cag_1596 hypothetical protein. (249 aa)    
Predicted Functional Partners:
bshC
KEGG: cch:Cag_0292 hypothetical protein; Belongs to the BshC family.
 
  
 0.901
Ppha_0847
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0799 glycosyl transferase, group 1.
 
 
 0.882
Ppha_1354
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_1338 methyltransferase type 11.
 
   
 0.568
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.564
Ppha_1775
KEGG: cch:Cag_0405 hypothetical protein.
       0.529
Ppha_0431
PFAM: UvrB/UvrC protein; protein of unknown function DUF151; KEGG: cph:Cpha266_0395 protein of unknown function DUF151.
  
     0.518
Ppha_2392
KEGG: cch:Cag_0299 hypothetical protein.
 
     0.510
Ppha_0246
KEGG: cph:Cpha266_1202 hypothetical protein.
  
    0.464
Ppha_1213
PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cch:Cag_0722 HDIG; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
  
 0.438
Ppha_1879
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0955 methyltransferase type 12.
 
     0.410
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.