STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1802PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0705 hypothetical protein. (249 aa)    
Predicted Functional Partners:
Ppha_1801
PFAM: Gas vesicle K; KEGG: plt:Plut_0706 hypothetical protein.
 
     0.946
Ppha_1804
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0703 hypothetical protein.
 
     0.929
Ppha_1803
PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0704 hypothetical protein.
 
     0.928
Ppha_1807
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0700 hypothetical protein.
 
     0.885
Ppha_1808
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0699 hypothetical protein.
 
     0.874
Ppha_1809
PFAM: heat shock protein DnaJ domain protein; Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0698 hypothetical protein.
 
     0.867
Ppha_1813
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
  
     0.771
Ppha_1818
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
  
     0.771
Ppha_1819
PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0689 gas vesicle synthesis protein GvpA.
  
     0.771
Ppha_1820
PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0689 gas vesicle synthesis protein GvpA.
  
     0.771
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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