STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1806PFAM: Gas vesicle G; KEGG: plt:Plut_0701 hypothetical protein. (90 aa)    
Predicted Functional Partners:
Ppha_1807
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0700 hypothetical protein.
 
   
 0.954
Ppha_1808
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0699 hypothetical protein.
 
     0.930
Ppha_1809
PFAM: heat shock protein DnaJ domain protein; Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0698 hypothetical protein.
 
     0.925
Ppha_1810
KEGG: plt:Plut_0697 AAA ATPase, CDC48; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; SMART: AAA ATPase; Belongs to the AAA ATPase family.
 
     0.892
Ppha_1804
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0703 hypothetical protein.
 
     0.868
Ppha_1803
PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0704 hypothetical protein.
 
     0.836
Ppha_1801
PFAM: Gas vesicle K; KEGG: plt:Plut_0706 hypothetical protein.
 
   
 0.795
Ppha_1815
KEGG: plt:Plut_0692 ATPase; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
   
 0.734
Ppha_1812
KEGG: plt:Plut_0695 hypothetical protein; Belongs to the small heat shock protein (HSP20) family.
 
     0.731
Ppha_1802
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0705 hypothetical protein.
 
     0.696
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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