Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Ppha_1808PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0699 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Ppha_1806
PFAM: Gas vesicle G; KEGG: plt:Plut_0701 hypothetical protein.
 
     0.930
Ppha_1810
KEGG: plt:Plut_0697 AAA ATPase, CDC48; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; SMART: AAA ATPase; Belongs to the AAA ATPase family.
 
     0.893
Ppha_1804
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0703 hypothetical protein.
 
     0.888
Ppha_1803
PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0704 hypothetical protein.
 
     0.886
Ppha_1801
PFAM: Gas vesicle K; KEGG: plt:Plut_0706 hypothetical protein.
 
     0.875
Ppha_1802
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0705 hypothetical protein.
 
     0.874
Ppha_1809
PFAM: heat shock protein DnaJ domain protein; Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0698 hypothetical protein.
 
    
0.836
Ppha_1807
PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0700 hypothetical protein.
 
    
0.781
Ppha_1813
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
  
     0.773
Ppha_1818
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
  
     0.773
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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