STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1817KEGG: plt:Plut_0690 hypothetical protein. (203 aa)    
Predicted Functional Partners:
Ppha_1816
KEGG: plt:Plut_0691 hypothetical protein.
       0.710
Ppha_1818
Gas vesicle protein GVPa; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
       0.484
Ppha_1815
KEGG: plt:Plut_0692 ATPase; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
       0.462
Ppha_1814
KEGG: plt:Plut_0693 hypothetical protein.
       0.403
Ppha_1819
PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0689 gas vesicle synthesis protein GvpA.
       0.403
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.