STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1833KEGG: cph:Cpha266_1229 succinylglutamate desuccinylase/aspartoacylase. (347 aa)    
Predicted Functional Partners:
Ppha_1832
KEGG: cph:Cpha266_1230 hypothetical protein.
 
     0.950
Ppha_1094
PFAM: major facilitator superfamily MFS_1; KEGG: cch:Cag_0889 transporter, putative.
  
     0.683
Ppha_1836
Methyltransferase type 11; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_2109 methyltransferase type 11.
  
     0.653
Ppha_2501
KEGG: cph:Cpha266_0524 hypothetical protein.
  
     0.631
Ppha_1332
KEGG: cph:Cpha266_2508 hypothetical protein.
 
     0.567
Ppha_2325
PFAM: Rhodanese domain protein; KEGG: cch:Cag_1960 rhodanese-like.
  
     0.516
Ppha_2334
PFAM: ribulose bisphosphate carboxylase large chain; KEGG: plt:Plut_0412 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
  
     0.453
Ppha_2540
PFAM: FAD dependent oxidoreductase; KEGG: cph:Cpha266_2269 FAD dependent oxidoreductase.
  
     0.402
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.