STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1840Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0845 transcriptional regulator, XRE family. (131 aa)    
Predicted Functional Partners:
Ppha_1841
KEGG: pfl:PFL_1053 hypothetical protein.
 
 
 0.972
Ppha_1842
KEGG: plu:plu3890 hypothetical protein.
       0.456
Ppha_1843
PFAM: Protein of unknown function DUF1778; KEGG: plu:plu3889 hypothetical protein.
       0.456
Ppha_2503
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: psp:PSPPH_B0056 DNA-damage-inducible protein.
 
   
 0.453
Ppha_1844
PFAM: protein of unknown function DUF1044; KEGG: plt:Plut_1817 hypothetical protein.
 
    0.413
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.