Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1841KEGG: pfl:PFL_1053 hypothetical protein. (102 aa)    
Predicted Functional Partners:
Ppha_1840
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0845 transcriptional regulator, XRE family.
 
 
 0.966
Ppha_1834
KEGG: cch:Cag_0845 transcriptional regulator, XRE family.
 
 
 0.889
Ppha_1845
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_1818 transcriptional regulator, XRE family.
  
 
 0.604
Ppha_1842
KEGG: plu:plu3890 hypothetical protein.
       0.465
Ppha_1843
PFAM: Protein of unknown function DUF1778; KEGG: plu:plu3889 hypothetical protein.
       0.465
Ppha_2503
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: psp:PSPPH_B0056 DNA-damage-inducible protein.
  
  
 0.442
Ppha_0057
Transcriptional regulator, XRE family; KEGG: cph:Cpha266_0071 helix-turn-helix domain protein.
  
 
 0.441
Ppha_0164
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_1818 transcriptional regulator, XRE family.
  
 
 0.441
Ppha_0605
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: mmw:Mmwyl1_3898 helix-turn-helix domain protein.
  
 
 0.441
Ppha_0975
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: plt:Plut_1042 transcriptional regulator, XRE family.
  
 
 0.441
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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