Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ppha_1845Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_1818 transcriptional regulator, XRE family. (105 aa)    
Predicted Functional Partners:
Ppha_1844
PFAM: protein of unknown function DUF1044; KEGG: plt:Plut_1817 hypothetical protein.
 
    0.947
Ppha_0165
PFAM: protein of unknown function DUF1044; KEGG: plt:Plut_1817 hypothetical protein.
 
    0.779
Ppha_1405
KEGG: cph:Cpha266_1290 hypothetical protein.
  
     0.772
Ppha_1841
KEGG: pfl:PFL_1053 hypothetical protein.
  
 
 0.604
Ppha_1842
KEGG: plu:plu3890 hypothetical protein.
 
     0.592
Ppha_1843
PFAM: Protein of unknown function DUF1778; KEGG: plu:plu3889 hypothetical protein.
 
     0.576
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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