STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1847KEGG: fps:FP1227 probable transcriptional regulator, XRE family. (118 aa)    
Predicted Functional Partners:
Ppha_1596
KEGG: cph:Cpha266_1700 hypothetical protein.
 
 
 0.960
Ppha_1597
PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1701 helix-turn-helix domain protein.
  
     0.746
Ppha_1849
PFAM: SMC domain protein; KEGG: mar:MAE_39710 ATPase.
 
     0.601
Ppha_1848
KEGG: scl:sce7684 hypothetical protein.
       0.538
Ppha_1851
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0938 helix-turn-helix domain protein.
 
   
 0.535
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.