Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1876PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; Belongs to the ferrochelatase family. (349 aa)    
Predicted Functional Partners:
Ppha_1877
KEGG: cph:Cpha266_0957 hypothetical protein.
 
     0.928
Ppha_0482
KEGG: cph:Cpha266_0474 hypothetical protein.
 
  
 0.778
Ppha_2743
KEGG: cph:Cpha266_0192 hypothetical protein.
 
  
 0.776
Ppha_2603
KEGG: cph:Cpha266_0345 hypothetical protein.
 
     0.774
Ppha_1875
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0959 TPR repeat-containing protein.
       0.765
Ppha_0028
KEGG: cch:Cag_0034 hypothetical protein.
  
     0.764
Ppha_1504
KEGG: cph:Cpha266_1536 hypothetical protein.
  
     0.764
Ppha_1874
KEGG: cph:Cpha266_0960 hypothetical protein.
       0.757
Ppha_2540
PFAM: FAD dependent oxidoreductase; KEGG: cph:Cpha266_2269 FAD dependent oxidoreductase.
 
 
 0.756
Ppha_0723
PFAM: metallophosphoesterase; KEGG: plt:Plut_1594 hypothetical protein.
  
     0.746
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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