STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1883KEGG: sus:Acid_1151 hypothetical protein. (369 aa)    
Predicted Functional Partners:
Ppha_1882
KEGG: sus:Acid_1150 hypothetical protein.
       0.781
Ppha_2034
KEGG: mar:MAE_40420 hypothetical protein.
  
     0.576
Ppha_2523
KEGG: rpe:RPE_2175 hypothetical protein.
  
     0.570
Ppha_2614
KEGG: maq:Maqu_0563 hypothetical protein.
 
     0.546
Ppha_2233
KEGG: nmn:NMCC_0685 hypothetical protein.
 
     0.540
Ppha_1880
PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region.
  
    0.522
Ppha_1881
PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein.
       0.515
Ppha_0916
KEGG: cph:Cpha266_1711 DNA-damage-inducible protein D.
  
     0.496
Ppha_1884
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein.
       0.496
Ppha_1885
PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_0953 recombination factor protein RarA.
       0.478
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.