STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1884PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein. (483 aa)    
Predicted Functional Partners:
Ppha_1634
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0987 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.777
Ppha_1885
PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_0953 recombination factor protein RarA.
  
    0.753
Ppha_1886
TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: cph:Cpha266_0952 riboflavin synthase subunit alpha.
       0.749
Ppha_0432
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15).
  
   
 0.709
Ppha_2580
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_2310 TonB-dependent receptor.
  
   
 0.709
Ppha_2369
PFAM: permease YjgP/YjgQ family protein; KEGG: cch:Cag_0302 hypothetical protein.
  
     0.684
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.663
Ppha_1676
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cch:Cag_0972 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.608
Ppha_0636
PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1842 secretion protein HlyD family protein.
 
 
 0.595
Ppha_0064
PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_0094 secretion protein HlyD family protein.
 
 
 0.590
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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