STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1909KEGG: pna:Pnap_3261 hypothetical protein. (952 aa)    
Predicted Functional Partners:
Ppha_1908
PFAM: OmpA/MotB domain protein; KEGG: pau:PA14_31620 putative ABC-type periplasmic phosphate-binding protein.
       0.713
Ppha_1739
KEGG: mlo:mlr2530 hypothetical protein.
  
     0.494
Ppha_1259
PFAM: protein of unknown function DUF477; KEGG: rpa:RPA1574 DUF477.
  
  
 0.491
Ppha_2363
PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1773 hypothetical protein.
  
  
 0.491
Ppha_0886
KEGG: cph:Cpha266_1440 hypothetical protein.
  
     0.482
Ppha_0586
KEGG: pol:Bpro_1359 hypothetical protein.
  
     0.459
Ppha_2135
PFAM: RES domain protein; KEGG: neu:NE0745 hypothetical protein.
  
     0.405
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.