Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_1932Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0650 transcriptional regulator, XRE family. (91 aa)    
Predicted Functional Partners:
Ppha_0790
PFAM: protein of unknown function DUF891; KEGG: cph:Cpha266_0649 protein of unknown function DUF891.
  
     0.773
Ppha_2124
PFAM: protein of unknown function DUF891; KEGG: cph:Cpha266_0649 protein of unknown function DUF891.
  
     0.773
Ppha_1916
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0914 transcriptional regulator, XRE family.
  
     0.728
Ppha_1917
KEGG: cch:Cag_0913 hypothetical protein.
  
     0.573
Ppha_0848
KEGG: cch:Cag_1290 cell shape determining protein MreB/Mrl; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein.
   
 
 0.531
Ppha_1921
PFAM: cell shape determining protein MreB/Mrl; KEGG: plt:Plut_0553 cell shape determining protein MreB/Mrl.
   
 
 0.531
Ppha_0659
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: plt:Plut_1641 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.524
Ppha_2224
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cch:Cag_1419 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.524
Ppha_2702
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cph:Cpha266_2541 competence/damage-inducible protein CinA; Belongs to the CinA family.
  
    0.440
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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