STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1980PFAM: DNA methylase N-4/N-6 domain protein; KEGG: btr:Btr_1180 methyltransferase. (547 aa)    
Predicted Functional Partners:
Ppha_1979
PFAM: type III restriction protein res subunit; KEGG: mca:MCA0026 type III restriction-modification system, R subunit, putative.
 
  
 0.925
Ppha_0344
PFAM: type III restriction protein res subunit; KEGG: neu:NE2306 hypothetical protein.
 
  
 0.839
Ppha_1983
PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1953 helicase domain protein.
 
     0.831
Ppha_1130
KEGG: cte:CT0911 type III restriction system endonuclease.
 
  
 0.787
Ppha_1126
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: cte:CT0906 DNA-dependent ATPase, SNF2 family protein.
 
     0.659
Ppha_2911
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: psa:PST_3195 ATP-dependent helicase HEPA.
 
   
 0.622
Ppha_1981
Hypothetical protein.
       0.498
Ppha_1127
KEGG: cte:CT0907 hypothetical protein.
 
     0.472
Ppha_0341
KEGG: sph:MGAS10270_Spy0033 hypothetical protein.
 
     0.446
Ppha_1982
Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1951 plasmid maintenance system antidote protein, XRE family.
       0.414
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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