STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1983PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1953 helicase domain protein. (966 aa)    
Predicted Functional Partners:
Ppha_1980
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: btr:Btr_1180 methyltransferase.
 
     0.832
Ppha_1979
PFAM: type III restriction protein res subunit; KEGG: mca:MCA0026 type III restriction-modification system, R subunit, putative.
 
    0.830
Ppha_0344
PFAM: type III restriction protein res subunit; KEGG: neu:NE2306 hypothetical protein.
 
    0.763
Ppha_1982
Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1951 plasmid maintenance system antidote protein, XRE family.
       0.762
Ppha_0342
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpe:RPE_0561 DNA methylase N-4/N-6 domain protein.
 
     0.755
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.687
Ppha_2240
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: gur:Gura_4390 site-specific DNA-methyltransferase (adenine-specific).
 
     0.629
Ppha_1981
Hypothetical protein.
       0.609
Ppha_0341
KEGG: sph:MGAS10270_Spy0033 hypothetical protein.
  
 
 0.589
Ppha_1984
Hypothetical protein.
       0.576
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.